Theory:
Bibliography on Secret Sharing Schemes - List maintained by Douglas Stinson and Ruizhong Wei.
Boolean Function Nonlinearity - A detailed discussion of cryptographic nonlinearity, what it means and how it is computed, with active JavaScript panels to perform the computation.
Chaffing and Winnowing - An interesting paper by Ron Rivest about providing confidentiality without encryption.
Claude Shannon's Communication Theory of Secrecy Systems - 1949 Bell Labs research paper on theoretical secrecy and perfect encryption cryptography.
Cryptodox - A community wiki. Basic cryptography theory and information security resources.
Introduction to Cryptography - Elementary information on cryptographic theory, digital signatures, protocols, and cryptanalysis.
Paul Garrett: Crypto and Number Theory - Lecture notes for a course on cryptography and number theory.
Random number generation and RFC 1750 - Information regarding best practice random number generation for cryptography.
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